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GeneCat: a convenient tool to catch genomic sequence and CDS.
Target (reference) genome:
Oryza sativa japonica (Nipponbare, IRGSP1.0)
Oryza sativa japonica (Nipponbare, MSU7.0)
Oryza sativa Indica (93-11, ASM465v1)
Oryza sativa indica (MH63RS3)
Oryza sativa indica (ZS97RS3)
Oryza sativa indica (MH63)
Oryza sativa indica (ZS97)
Oryza sativa indica (Shuhui498, R498)
Oryza sativa japonica (Zhonghua 11, ZH11, RiceRC)
Oryza sativa japonica (Kongyu131, KY131, RiceRC)
Oryza sativa japonica (02428, RiceRC)
Arabidopsis thaliana (TAIR10)
Arabidopsis lyrata (v.1.0)
Ananas comosus v3 (Pineapple)
Apple (GDDH13 Version 1.1)
Brachypodium distachyon (v1.0)
Brassica napus (Genoscope, v5)
Brassica rapa (IVFCAASv1)
Brassica oleracea var. oleracea (NCBI)
broccoli (06-9-28)
Camelina sativa (false flax, NCBI)
Cyanidioschyzon merolae (ASM9120v1)
Cucumber (ChineseLong v2, cucurbitgenomics)
Cucurbita moschata (Rifu), CuGenDB v1
Glycine max (v1.0)
Gossypium hirsutum (v1.1, Upland cotton, NBI-AD1)
Hordeum vulgare (ASM32608v1)
Kiwifruit (KIR)
Dimocarpus longan
Medicago truncatula (MedtrA17_4.0)
Musa acuminata (MA1)
Mguttatus_256_v2.0, Mimubase
Morus notabilis (NCBI)
N. tabacum K326 Sierro (Tobacco, Sol Genomics)
Solanum tuberosum (SolTub_3.0)
Solanum tuberosum (Potato, A6-26)
Physcomitrella patens (PhytozomeV11)
Populus trichocarpa (JGI2.0)
Poplar_84k (poplar_84k_genome, CNSA)
Prunus persica (Prupe1_0)
Prunus persica V2 (Prupe V2, GDR)
Setaria italica (JGIv2.0)
Solanum lycopersicum (SL2.50)
Sorghum bicolor (Sorbi1)
Theobroma cacao
Vitis vinifera (IGGP_12x)
Zea mays (AGPv4)
Zea mays (B73_v5)
Zoysia japonica (Zoysia Genome Database, r1.1)
Zoysia matrella (Zoysia Genome Database, r1.1)
Zoysia pacifica (Zoysia Genome Database, r1.1)
Human (GRCh38.p10)
Mouse (GRCm38.p5)
Zebrafish (GRCz10)
Drosophila melanogaster (FlyBase; Ensemble BDGP6)
Caenorhabditis elegans (WormBase; Ensembl WBcel235)
None
Arabidopsis thaliana mitochondrion (TAIR10)
Oryza sativa mitochondrion (Nipponbare)
Zea mays mitochondrion (B73v2)
Human mitochondrion (GRCh38)
Mouse mitochondrion (GRCm38)
Zebrafish mitochondrion (GRCz10)
Arabidopsis thaliana chloroplast (TAIR10)
Oryza sativa chloroplast (Nipponbare)
Zea mays chloroplast (B73v2)
* If the reference genome sequence is not available, you can select a close relative species or "None".
Sequence submission
If the fragment sequence is submited, the target gene is based on this sequence, and the gene ID is not needed.
Please enter
a fragment sequence (genomic or CDS, >100bp)
of your target gene.
See example
.
Or
Input your target gene ID of the selected reference genome
(If a gene ID is submited, candidate targets are based on the reference genome, and the above sequence submission is not needed.)
Gene locus:
eg:
Os01g0104000
or LOC_Os01g01410
Flanking sequence setting
Set the upstream and downstream length
5' flanking (promoter) sequence:
bp * (0--10000 bp)
3' flanking (downstream) sequence:
bp * (0--5000 bp)
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